| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_426 | 56267 | T | C | 28 | 535.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_426 | 71814 | C | T | 33 | 407.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_426 | 71828 | G | A | 33 | 116.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_426 | 71839 | C | T | 35 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_426 | 71880 | C | T | 15 | 221.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_427 | 1783 | T | C | 10 | 216.84 | intron | Transition | 0/1 | Unannotated |
| Scaffold_427 | 55476 | T | C | 13 | 227.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_428 | 74219 | A | G | 12 | 155.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_432 | 7092 | A | G | 19 | 242.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_434 | 43789 | A | G | 26 | 68.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_436 | 10647 | A | G | 11 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_440 | 46633 | C | T | 244 | 156.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_445 | 1076 | T | C | 48 | 68.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_445 | 21725 | T | C | 16 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_445 | 62938 | G | A | 14 | 126.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_446 | 33550 | C | T | 52 | 81.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_451 | 69053 | G | A | 37 | 523.77 | intron | Transition | 0/1 | Cysteine proteinase RD21A (EC 3.4.22.-) (Protein RESPONSIVE TO DEHYDRATION 21) (RD21) |
| Scaffold_451 | 69055 | A | G | 95 | 894.77 | intron | Transition | 0/1 | Oryzain alpha chain (EC 3.4.22.-) |
| Scaffold_452 | 66703 | C | T | 14 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_455 | 62937 | T | C | 250 | 97.77 | exon | Transition | 0/1 | Unannotated |