| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_570 | 51379 | C | T | 17 | 318.96 | CDS | Transition | 0/1 | Probable galactinol--sucrose galactosyltransferase 6 (EC 2.4.1.82) (Protein DARK INDUCIBLE 10) (Raffinose synthase 6) |
| Scaffold_574 | 30805 | C | T | 12 | 211.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_575 | 65969 | T | C | 102 | 37.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_575 | 66638 | T | C | 250 | 1872.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_575 | 66707 | C | T | 236 | 224.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_575 | 66722 | C | T | 101 | 932.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_575 | 66728 | G | A | 94 | 929.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_583 | 21438 | T | C | 61 | 129.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_591 | 8700 | C | T | 13 | 106.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_591 | 32443 | A | G | 36 | 505.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_591 | 32444 | A | G | 28 | 247.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_598 | 805 | C | T | 22 | 72.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_599 | 37925 | C | T | 250 | 1371.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_599 | 37957 | C | T | 246 | 1441.77 | exon | Transition | 0/1 | Seed trypsin/chymotrypsin inhibitor TI5-72 |
| Scaffold_599 | 37990 | A | G | 101 | 2070.77 | exon | Transition | 0/1 | Seed trypsin/chymotrypsin inhibitor TI5-72 |
| Scaffold_599 | 38000 | G | A | 62 | 1191.77 | exon | Transition | 0/1 | Seed trypsin/chymotrypsin inhibitor TI5-72 |
| Scaffold_606 | 7517 | C | T | 13 | 217.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_606 | 18913 | G | A | 88 | 633.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_620 | 27050 | C | T | 52 | 240.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_623 | 28287 | G | A | 14 | 116.77 | noncoding | Transition | 0/1 | Unannotated |