| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_849 | 4485 | T | C | 20 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_857 | 61219 | A | G | 185 | 3052.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_857 | 61327 | T | C | 41 | 828.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_857 | 61378 | C | T | 101 | 384.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_857 | 61456 | A | G | 167 | 2514.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_857 | 62510 | A | G | 26 | 607.78 | exon | Transition | 0/1 | Unannotated |
| Scaffold_861 | 56161 | T | C | 37 | 376.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_863 | 23676 | T | C | 11 | 75.77 | intron | Transition | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_865 | 62121 | A | G | 16 | 286.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_869 | 5035 | G | A | 19 | 35.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_870 | 61762 | T | C | 11 | 179.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_873 | 40933 | A | G | 58 | 85.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_877 | 9967 | A | G | 24 | 130.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1747 | C | T | 221 | 1921.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1749 | A | G | 226 | 2128.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1869 | T | C | 100 | 288.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1884 | A | G | 90 | 51.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_886 | 4806 | T | C | 11 | 207.77 | noncoding | Transition | 0/1 | Putative disease resistance protein At5g47280 |
| Scaffold_886 | 4807 | G | A | 14 | 225.77 | noncoding | Transition | 0/1 | Putative disease resistance protein At5g47280 |
| Scaffold_894 | 34175 | G | A | 17 | 60.77 | exon | Transition | 0/1 | Unannotated |