| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_990 | 6305 | T | C | 249 | 280.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_990 | 6316 | A | G | 244 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_990 | 6328 | A | G | 249 | 2679.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_990 | 6408 | G | A | 249 | 2118.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_990 | 6429 | G | A | 250 | 2923.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_996 | 1878 | A | G | 10 | 152.77 | noncoding | Transition | 0/1 | Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4) |
| Scaffold_1006 | 19894 | A | G | 14 | 59.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1006 | 20847 | C | T | 16 | 125.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1011 | 55095 | T | C | 74 | 476.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1018 | 55379 | T | C | 21 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1019 | 9189 | G | A | 23 | 417.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1019 | 9211 | A | G | 18 | 251.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1019 | 9305 | T | C | 17 | 208.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1021 | 23550 | T | C | 250 | 324.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1025 | 41417 | G | A | 17 | 185.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1031 | 42032 | T | C | 33 | 38.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1031 | 42394 | G | A | 61 | 466.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1033 | 9579 | C | T | 27 | 176.77 | exon | Transition | 0/1 | Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTI |
| Scaffold_1035 | 7607 | C | T | 16 | 366.53 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1035 | 19864 | G | A | 18 | 406.77 | CDS | Transition | 0/1 | Unannotated |