| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1117 | 15757 | A | G | 249 | 157.77 | noncoding | Transition | 0/1 | 60S ribosomal protein L7-2 |
| Scaffold_1118 | 18511 | G | A | 93 | 187.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1118 | 18520 | T | C | 94 | 206.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1118 | 18598 | T | C | 41 | 531.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1118 | 19298 | G | A | 20 | 204.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1118 | 19988 | C | T | 97 | 330.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1120 | 53526 | G | A | 13 | 195.77 | CDS | Transition | 0/1 | Probable uridine nucleosidase 2 (EC 3.2.2.3) (Uridine ribohydrolase 2) |
| Scaffold_1136 | 36244 | C | T | 79 | 675.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1139 | 3023 | T | C | 195 | 180.77 | CDS | Transition | 0/1 | AP2/ERF and B3 domain-containing transcription repressor TEM1 (Protein TEMPRANILLO 1) (RAV1-like ethylene-responsive transcription factor TEM1) |
| Scaffold_1139 | 7060 | C | T | 57 | 882.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1148 | 37489 | T | C | 245 | 1962.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1148 | 37533 | C | T | 130 | 287.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1148 | 37560 | A | G | 248 | 4753.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1150 | 46644 | C | T | 10 | 37.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1151 | 3664 | A | G | 116 | 441.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1151 | 3677 | A | G | 84 | 212.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1156 | 50047 | C | T | 12 | 169.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1158 | 18527 | C | T | 11 | 36.77 | CDS | Transition | 0/1 | Hexokinase-2, chloroplastic (EC 2.7.1.1) (NtHxK2) |
| Scaffold_1168 | 24242 | G | A | 17 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1175 | 20806 | T | C | 35 | 139.77 | noncoding | Transition | 0/1 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2) |