| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1178 | 16649 | T | C | 22 | 130.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1180 | 18556 | T | C | 15 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1180 | 18671 | C | T | 49 | 937.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1180 | 19064 | G | A | 120 | 1577.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1180 | 19107 | C | T | 96 | 959.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1180 | 52409 | C | T | 14 | 69.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1185 | 15237 | A | G | 20 | 358.53 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1189 | 19143 | C | T | 30 | 244.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1191 | 6997 | C | T | 11 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1194 | 52104 | T | C | 15 | 255.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1198 | 3994 | A | G | 96 | 1077.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1201 | 39340 | T | C | 11 | 46.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1217 | 3030 | C | T | 100 | 93.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1230 | 6667 | G | A | 57 | 182.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1248 | 3844 | C | T | 15 | 200.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1250 | 33284 | A | G | 30 | 184.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1259 | 50078 | C | T | 10 | 144.77 | noncoding | Transition | 0/1 | Nucleobase-ascorbate transporter 4 (AtNAT4) (AtPER) |
| Scaffold_1259 | 50079 | A | G | 10 | 148.77 | noncoding | Transition | 0/1 | Nucleobase-ascorbate transporter LPE1 (Leaf permease protein 1) |
| Scaffold_1266 | 49651 | C | T | 21 | 289.77 | CDS | Transition | 0/1 | Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) |
| Scaffold_1266 | 49686 | A | G | 23 | 297.77 | CDS | Transition | 0/1 | Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) |