| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1308 | 44338 | A | G,T | 17 | 1016.77 | intron | Transition | 1/2 | Unannotated |
| Scaffold_1316 | 36499 | T | C | 95 | 1810.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1324 | 48267 | A | G | 11 | 205.03 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1328 | 28736 | A | G | 250 | 277.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1328 | 34747 | C | T | 30 | 84.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1354 | 33478 | G | A | 132 | 56.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1357 | 37187 | G | A | 13 | 98.77 | exon | Transition | 0/1 | CSC1-like protein RXW8 |
| Scaffold_1360 | 34179 | T | C | 250 | 79.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1360 | 34228 | T | C | 250 | 276.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1360 | 34268 | T | C | 250 | 223.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1360 | 34584 | T | C | 250 | 313.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1360 | 34621 | T | C | 250 | 223.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1360 | 34772 | T | C | 88 | 450.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1361 | 8671 | G | A | 37 | 567.77 | noncoding | Transition | 0/1 | Transcription factor bHLH18 (Basic helix-loop-helix protein 18) (AtbHLH18) (bHLH 18) (Transcription factor EN 28) (bHLH transcription factor bHLH018) |
| Scaffold_1361 | 8672 | T | A,C | 24 | 814.77 | noncoding | Transition | 1/2 | Transcription factor bHLH18 (Basic helix-loop-helix protein 18) (AtbHLH18) (bHLH 18) (Transcription factor EN 28) (bHLH transcription factor bHLH018) |
| Scaffold_1361 | 31738 | A | G | 32 | 388.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1361 | 31739 | C | T | 35 | 416.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1363 | 45573 | T | C | 11 | 50.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1375 | 33655 | C | T | 12 | 174.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1377 | 30943 | G | A | 69 | 45.77 | CDS | Transition | 0/1 | Unannotated |