| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_28 | 495998 | C | A | 31 | 642.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 496013 | G | C | 24 | 392.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 496469 | G | T | 12 | 254.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 499802 | T | G | 12 | 113.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 660772 | C | G | 27 | 175.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 794209 | T | G | 11 | 39.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 800377 | C | A | 250 | 789.77 | CDS | Transversion | 0/1 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_28 | 800516 | T | A | 29 | 36.77 | CDS | Transversion | 0/1 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_28 | 948789 | T | A | 13 | 183.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 953974 | A | C | 20 | 385.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1085126 | C | A | 13 | 48.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1304863 | C | A | 13 | 158.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1455697 | C | A | 16 | 218.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1464036 | A | T | 21 | 51.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1638926 | T | G | 25 | 178.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1691743 | T | G | 33 | 107.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1831157 | G | C | 14 | 36.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1831158 | C | A | 14 | 41.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1844942 | A | T | 63 | 996.77 | CDS | Transversion | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |
| Scaffold_28 | 1845074 | A | T | 49 | 556.77 | intron | Transversion | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |