| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1697 | 965 | C | T | 36 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1699 | 31991 | T | C | 69 | 124.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1699 | 32323 | T | C | 35 | 823.22 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1713 | 30442 | A | G | 54 | 614.77 | noncoding | Transition | 0/1 | Putative UPF0481 protein At3g02645 |
| Scaffold_1721 | 32455 | T | C,G | 11 | 332.77 | noncoding | Transition | 1/2 | Unannotated |
| Scaffold_1735 | 2346 | G | A | 35 | 198.77 | noncoding | Transition | 0/1 | Catalase (EC 1.11.1.6) |
| Scaffold_1743 | 363 | A | G | 38 | 394.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1747 | 128 | T | C | 20 | 92.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1751 | 25231 | A | G | 68 | 1445.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1758 | 7137 | G | A | 19 | 431.85 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1773 | 31138 | T | C | 16 | 216.98 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1773 | 31169 | A | G | 17 | 297.96 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1774 | 4977 | A | G | 17 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1774 | 5108 | C | T | 250 | 5686.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1782 | 758 | T | C | 152 | 1064.77 | CDS | Transition | 0/1 | Cytochrome P450 716A67 (EC 1.14.13.-) |
| Scaffold_1782 | 822 | A | G | 20 | 335.78 | CDS | Transition | 0/1 | Cytochrome P450 716A67 (EC 1.14.13.-) |
| Scaffold_1791 | 27387 | A | G | 14 | 37.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1791 | 27419 | G | A | 52 | 1127.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1792 | 29481 | G | A | 11 | 72.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1802 | 41833 | C | T | 242 | 291.77 | noncoding | Transition | 0/1 | Unannotated |