| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1802 | 41862 | T | C | 217 | 399.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1809 | 16527 | A | G | 27 | 58.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1820 | 370 | C | T | 12 | 119.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1843 | 2322 | T | C | 11 | 135.85 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1847 | 12679 | T | C | 89 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1871 | 18351 | T | C | 75 | 1373.77 | noncoding | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1871 | 18353 | A | G | 73 | 1376.77 | noncoding | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1885 | 14288 | A | G | 11 | 224.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1891 | 62 | A | G | 21 | 43.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1891 | 63 | G | A | 22 | 33.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1900 | 40258 | A | G | 250 | 1156.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1900 | 40592 | C | T | 15 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1901 | 41700 | A | G | 51 | 105.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1910 | 685 | G | A | 17 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1910 | 694 | T | C | 21 | 136.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1910 | 38475 | C | T | 15 | 321.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1915 | 12721 | C | T | 18 | 273.77 | noncoding | Transition | 0/1 | Cellulose synthase-like protein D5 (AtCslD5) (EC 2.4.1.-) |
| Scaffold_1942 | 14425 | G | A | 53 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1943 | 6143 | T | C | 20 | 80.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1943 | 6178 | T | C | 12 | 49.77 | CDS | Transition | 0/1 | Unannotated |