| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2400 | 120073 | C | T | 54 | 73.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2400 | 120138 | G | A | 36 | 562.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 44293 | C | T | 51 | 530.77 | exon | Transition | 0/1 | Glyoxylate/hydroxypyruvate reductase HPR3 (EC 1.1.1.79) (EC 1.1.1.81) (NAD(P)H-dependent hydroxypyruvate reductase 3) (AtHPR3) (HPR 3) |
| Scaffold_2401 | 56832 | T | C | 250 | 185.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57314 | A | G | 250 | 122.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57371 | A | G | 250 | 587.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57455 | T | C | 250 | 127.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57688 | T | C | 250 | 668.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57690 | T | C | 250 | 563.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 57713 | T | C | 250 | 898.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 62138 | A | G | 58 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 80368 | G | A | 55 | 117.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 79661 | A | G | 13 | 212.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 81842 | G | A | 41 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 81889 | T | C | 78 | 905.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 82075 | C | T | 119 | 2149.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 114845 | G | A | 20 | 45.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 115916 | A | G | 116 | 362.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 116811 | T | C | 69 | 305.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2402 | 116932 | A | G | 82 | 317.77 | noncoding | Transition | 0/1 | Unannotated |