| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2405 | 57728 | C | T | 17 | 105.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2405 | 57966 | C | T | 26 | 196.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2406 | 6017 | C | T | 21 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2406 | 6060 | C | T | 20 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2406 | 6319 | T | C | 12 | 186.77 | intron | Transition | 0/1 | V-type proton ATPase subunit a1 (V-ATPase subunit a1) (V-type proton ATPase 95 kDa subunit a isoform 1) (V-ATPase 95 kDa isoform a1) (Vacuolar H(+)-ATPase subunit a isoform 1) (Vacuolar proton pump subunit a1) (Vacuolar proton translocating ATPase 95 kDa |
| Scaffold_2406 | 61047 | T | C | 74 | 1175.77 | CDS | Transition | 0/1 | Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3) |
| Scaffold_2406 | 61110 | A | G | 118 | 2592.77 | CDS | Transition | 0/1 | Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3) |
| Scaffold_2406 | 61149 | C | T | 86 | 1762.77 | CDS | Transition | 0/1 | Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3) |
| Scaffold_2406 | 131810 | T | C | 25 | 400.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 6709 | G | A | 13 | 83.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 6809 | T | C | 69 | 122.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 6886 | C | T | 42 | 1008.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 6890 | G | A | 46 | 67.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 6926 | C | T | 24 | 214.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 9753 | C | T | 20 | 196.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2407 | 112081 | T | C | 24 | 465.77 | CDS | Transition | 0/1 | Calcium-dependent protein kinase 2 (CDPK 2) (EC 2.7.11.1) |
| Scaffold_2408 | 12132 | T | C | 156 | 206.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2408 | 21724 | T | C | 14 | 148.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2408 | 27211 | A | G | 13 | 44.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2408 | 27235 | G | A | 15 | 290.77 | noncoding | Transition | 0/1 | Unannotated |