| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2408 | 27853 | C | T | 59 | 492.77 | exon | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28432 | G | A | 95 | 510.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28545 | C | T | 90 | 135.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28603 | G | A | 61 | 65.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28729 | A | G | 56 | 657.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 28730 | T | C | 54 | 690.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2408 | 29909 | C | T | 11 | 107.77 | CDS | Transition | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |
| Scaffold_2409 | 79904 | T | C | 250 | 154.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2409 | 79906 | A | G | 250 | 482.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2411 | 26724 | A | G | 42 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2412 | 56284 | T | C | 13 | 46.77 | CDS | Transition | 0/1 | Fimbrin-2 (AtFIM2) (Fimbrin2) |
| Scaffold_2412 | 117244 | A | G | 21 | 215.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2413 | 32818 | G | A | 75 | 32.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2416 | 66194 | T | C | 17 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2419 | 165402 | T | C | 250 | 314.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2419 | 165523 | A | G | 249 | 53.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2419 | 166298 | A | G | 250 | 110.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2420 | 36315 | T | C | 21 | 85.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2425 | 75565 | A | G | 61 | 95.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2428 | 140657 | G | A | 36 | 731.77 | exon | Transition | 0/1 | Unannotated |