| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2430 | 13379 | T | C | 10 | 42.77 | CDS | Transition | 0/1 | Uncharacterized GPI-anchored protein At1g61900 |
| Scaffold_2430 | 40796 | T | C | 250 | 455.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 41503 | C | T | 51 | 215.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 42335 | T | C | 250 | 863.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 42639 | T | C | 85 | 1265.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 43503 | C | T | 11 | 128.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 63204 | G | A | 102 | 494.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 65728 | A | G | 14 | 51.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2430 | 128030 | T | C | 33 | 88.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 28508 | G | A | 11 | 155.84 | intron | Transition | 0/1 | Uncharacterized protein At4g14342 |
| Scaffold_2433 | 147884 | T | C | 120 | 2303.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 147894 | C | T | 130 | 3314.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 147994 | T | C | 241 | 6228.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148363 | G | A | 72 | 366.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148418 | C | T | 12 | 112.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148427 | A | G | 14 | 137.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148448 | C | T | 11 | 196.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148450 | C | T | 11 | 203.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148639 | T | C | 174 | 4070.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148753 | T | C | 178 | 3889.77 | exon | Transition | 0/1 | Unannotated |