| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2490 | 50447 | G | A | 250 | 2781.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2490 | 50612 | T | C | 48 | 589.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2492 | 47419 | A | G | 13 | 77.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2493 | 115464 | A | G | 13 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2495 | 103287 | A | G | 47 | 148.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2495 | 103387 | C | T | 55 | 583.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 103573 | G | A | 51 | 679.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104147 | G | A | 39 | 130.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104306 | G | A | 38 | 237.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104307 | T | C | 40 | 297.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104337 | T | C | 44 | 432.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104398 | A | G | 34 | 361.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104506 | C | T | 23 | 52.77 | exon | Transition | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104733 | C | T | 53 | 315.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2495 | 105018 | A | G | 24 | 100.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2496 | 11707 | T | C | 120 | 461.77 | CDS | Transition | 0/1 | Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3) |
| Scaffold_2496 | 88174 | G | A | 11 | 168.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2498 | 81268 | C | T | 36 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2498 | 105530 | G | A | 50 | 68.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2498 | 105610 | A | G | 37 | 666.77 | exon | Transition | 0/1 | Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) |