| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_29 | 1199846 | C | G | 35 | 313.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1199891 | T | A | 19 | 109.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1199904 | T | A | 20 | 80.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1211887 | G | C | 57 | 391.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1521454 | T | G | 13 | 269.9 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1521482 | A | T | 15 | 335.28 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 126080 | T | G | 13 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 350474 | T | A | 34 | 669.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 425370 | T | A | 55 | 720.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 571884 | A | T | 13 | 318.31 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 610104 | T | G | 20 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 655019 | A | C | 17 | 296.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 670169 | A | T | 13 | 87.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 673010 | C | A | 63 | 746.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 749659 | C | G | 15 | 269.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 867351 | T | G | 16 | 116.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 868521 | A | T | 33 | 91.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 876156 | T | A | 213 | 1848.77 | CDS | Transversion | 0/1 | Granule-bound starch synthase 1, chloroplastic/amyloplastic (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) |
| Scaffold_30 | 876725 | C | G | 11 | 220.18 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 936874 | G | T | 11 | 35.77 | CDS | Transversion | 0/1 | Unannotated |