| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2513 | 49261 | G | A | 15 | 126.79 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2513 | 115858 | T | C | 17 | 424.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2519 | 19796 | A | G | 37 | 95.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2519 | 23497 | A | G | 68 | 614.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2519 | 105132 | C | T | 71 | 240.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2519 | 106278 | T | C | 17 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2520 | 97286 | C | T | 19 | 98.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2520 | 99599 | C | T | 26 | 115.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2521 | 111436 | A | G | 18 | 379.74 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2521 | 111827 | T | C | 12 | 46.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2521 | 113291 | A | G | 11 | 90.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114094 | T | C | 16 | 348.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114111 | A | G | 14 | 36.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114250 | C | T | 19 | 256.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114266 | T | C | 18 | 122.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114281 | G | A | 19 | 213.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2522 | 49871 | G | A | 31 | 416.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2525 | 43330 | A | G | 138 | 56.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2525 | 46243 | G | A | 203 | 1256.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2526 | 70897 | G | A | 122 | 2336.77 | noncoding | Transition | 0/1 | Unannotated |