| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2576 | 56473 | G | A | 12 | 169.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2579 | 4393 | C | T | 12 | 39.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2579 | 4502 | T | C | 28 | 309.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2579 | 4528 | C | T | 25 | 100.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2579 | 4623 | A | G | 24 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2580 | 13121 | T | C | 19 | 73.77 | intron | Transition | 0/1 | DNA-binding protein BIN4 (Protein BRASSINOSTEROID INSENSITIVE 4) (Protein MIDGET) |
| Scaffold_2582 | 6724 | T | C | 205 | 1440.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2582 | 83369 | T | C | 10 | 122.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2583 | 8658 | T | C | 250 | 310.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2583 | 94801 | A | G | 78 | 99.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2584 | 82436 | T | C | 17 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2585 | 72161 | G | A | 43 | 925.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2585 | 72281 | C | T | 39 | 98.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18217 | C | T | 24 | 358.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18302 | T | C | 38 | 81.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18305 | C | T | 35 | 57.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2587 | 15470 | A | G | 12 | 156.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2587 | 15494 | G | A | 20 | 64.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2587 | 15590 | C | T | 150 | 1705.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2588 | 54822 | T | C | 82 | 346.77 | exon | Transition | 0/1 | Homoserine kinase (EC 2.7.1.39) (Protein DOWNY MILDEW RESISTANT 1) |