| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2621 | 88065 | A | G | 25 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2627 | 29078 | C | T | 29 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2627 | 91188 | A | G | 11 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2628 | 55963 | C | T | 31 | 205.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2637 | 7032 | A | G | 16 | 46.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2637 | 31402 | A | G | 72 | 598.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2637 | 31405 | A | G | 71 | 556.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2637 | 60472 | T | C | 20 | 178.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2637 | 60544 | C | T | 14 | 35.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2637 | 61001 | A | G | 250 | 4243.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2646 | 57636 | C | T | 17 | 35.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2647 | 1564 | T | C | 12 | 209.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2648 | 7743 | C | T | 37 | 166.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2648 | 7745 | A | G | 36 | 521.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2648 | 65615 | T | C | 53 | 52.77 | noncoding | Transition | 0/1 | Chavicol O-methyltransferase (EC 2.1.1.146) ((Iso)eugenol O-methyltransferase CVOMT1) (S-adenosysl-L-methionine:(Iso)eugenol O-methyltransferase CVOMT1) |
| Scaffold_2649 | 77878 | T | C | 21 | 94.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2651 | 43052 | A | G | 15 | 260.03 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2652 | 57210 | C | T | 10 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2654 | 34349 | T | C | 40 | 642.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2660 | 79859 | C | T | 11 | 115.77 | intron | Transition | 0/1 | Unannotated |