| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2666 | 16394 | T | C | 45 | 964.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2667 | 27038 | A | G | 13 | 240.89 | exon | Transition | 0/1 | Receptor-like protein EIX1 (EIX receptor 1) |
| Scaffold_2667 | 59392 | T | C | 55 | 376.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2668 | 54360 | T | C | 114 | 111.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2668 | 54857 | T | C | 11 | 96.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2669 | 42195 | G | A | 11 | 133.79 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2671 | 1478 | T | C | 22 | 308.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2677 | 4669 | G | A | 30 | 546.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2677 | 5730 | G | A | 21 | 80.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2677 | 19081 | A | G | 27 | 109.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2677 | 124700 | G | A | 81 | 1715.77 | intron | Transition | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2678 | 228 | A | G | 14 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2679 | 9667 | A | G | 37 | 71.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2680 | 83213 | T | C | 63 | 194.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2681 | 86513 | G | A | 24 | 118.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2681 | 152782 | C | T | 24 | 480.77 | CDS | Transition | 0/1 | Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (26S proteasome regulatory subunit RPN3) (Nuclear antigen 21D7) |
| Scaffold_2682 | 108813 | T | C | 15 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2683 | 36061 | A | G | 10 | 84.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2683 | 36062 | C | T | 12 | 135.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2683 | 40252 | T | C | 27 | 34.77 | CDS | Transition | 0/1 | Unannotated |