| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2815 | 5197 | G | A | 102 | 1423.77 | exon | Transition | 0/1 | Probable inactive dual specificity protein phosphatase-like At4g18593 |
| Scaffold_2815 | 5365 | C | T | 21 | 173.77 | CDS | Transition | 0/1 | Probable inactive dual specificity protein phosphatase-like At4g18593 |
| Scaffold_2815 | 5389 | C | T | 44 | 817.77 | CDS | Transition | 0/1 | Probable inactive dual specificity protein phosphatase-like At4g18593 |
| Scaffold_2831 | 22673 | C | T | 32 | 178.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 22833 | A | G | 16 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 23029 | A | G | 23 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 23273 | A | G | 11 | 121.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 23416 | C | T | 17 | 75.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 23427 | C | T | 18 | 114.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25107 | G | A | 37 | 98.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25175 | C | T | 36 | 804.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25313 | G | A | 22 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25489 | C | T | 38 | 589.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25542 | G | A | 38 | 246.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25577 | G | A | 26 | 211.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25617 | T | C | 16 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 25791 | C | T | 19 | 321.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 26716 | C | T | 44 | 721.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 26761 | C | T | 43 | 322.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2831 | 27475 | G | A | 18 | 40.77 | noncoding | Transition | 0/1 | Unannotated |