| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2849 | 7408 | A | G | 24 | 426.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2851 | 40203 | T | C | 10 | 99.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2851 | 40204 | G | A | 12 | 96.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2851 | 40240 | A | G | 22 | 565.1 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2852 | 4325 | G | A | 18 | 89.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4333 | T | C | 18 | 89.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4341 | C | T | 17 | 292.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4408 | T | C | 37 | 659.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4468 | T | C | 120 | 292.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4510 | C | T | 95 | 1827.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4543 | T | C | 45 | 528.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4582 | A | G | 46 | 411.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4633 | T | C | 116 | 518.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4660 | C | T | 134 | 425.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4714 | A | G | 107 | 2683.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2852 | 4856 | A | G | 124 | 457.77 | exon | Transition | 0/1 | Amino acid permease 3 (Amino acid transporter AAP3) |
| Scaffold_2853 | 436 | G | A | 64 | 1248.77 | noncoding | Transition | 0/1 | Shaggy-related protein kinase zeta (EC 2.7.11.1) (ASK-zeta) (Shaggy-related protein kinase 2-2) (AtSK2-2) (Shaggy-related protein kinase 23) (AtSK23) |
| Scaffold_2856 | 16928 | G | A | 247 | 998.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2856 | 16940 | A | G | 221 | 3498.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2868 | 53450 | A | G | 139 | 319.77 | noncoding | Transition | 0/1 | Unannotated |