| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3039 | 54057 | G | A | 93 | 424.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54066 | A | G | 50 | 486.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54275 | G | A | 24 | 328.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3039 | 54884 | C | T | 250 | 2481.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54973 | A | G | 113 | 1589.77 | intron | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55014 | A | G | 18 | 159.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3039 | 55077 | A | G | 19 | 294.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3039 | 55091 | T | C | 12 | 234.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3039 | 55158 | G | A | 114 | 186.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55501 | C | T | 250 | 4653.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55598 | T | C | 250 | 2414.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55681 | A | G | 242 | 1860.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55686 | A | G | 242 | 391.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55702 | C | T | 128 | 103.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55890 | C | T | 217 | 1206.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55943 | G | A | 248 | 1468.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55977 | C | T | 192 | 106.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 56821 | C | T | 46 | 31.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3040 | 25826 | C | T | 56 | 948.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3040 | 26915 | T | C | 12 | 196.77 | CDS | Transition | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |