| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_31 | 1371893 | A | C | 118 | 543.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 1542830 | A | T | 125 | 166.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 1638395 | T | A | 32 | 271.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 92032 | A | C | 14 | 70.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 109856 | A | T | 250 | 214.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 199129 | A | C | 34 | 48.77 | intron | Transversion | 0/1 | Palmitoyl-acyl carrier protein thioesterase, chloroplastic (EC 3.1.2.-) (16:0-acyl-carrier protein thioesterase) (16:0-ACP thioesterase) (Acyl-[acyl-carrier-protein] hydrolase) (PATE) |
| Scaffold_32 | 296391 | A | T | 19 | 242.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 296393 | A | T | 21 | 319.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 296610 | A | C | 250 | 548.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 297787 | G | T | 59 | 458.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 298167 | T | A | 160 | 4081.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 520493 | A | C | 10 | 120.94 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 610750 | T | A | 119 | 1847.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 610864 | A | T | 53 | 121.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 694729 | G | T | 26 | 172.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 695232 | C | A | 142 | 354.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 695285 | G | C | 93 | 302.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 695564 | A | T | 98 | 172.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 695627 | G | T | 25 | 569.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 696169 | A | T | 86 | 1206.77 | CDS | Transversion | 0/1 | Unannotated |