| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3132 | 27249 | T | C | 99 | 1827.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27261 | A | G | 104 | 1896.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27291 | G | A | 109 | 152.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3139 | 43068 | G | A | 16 | 44.77 | intron | Transition | 0/1 | Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) |
| Scaffold_3140 | 4324 | A | G | 19 | 98.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 4831 | G | A | 73 | 213.77 | noncoding | Transition | 0/1 | Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) |
| Scaffold_3140 | 4893 | G | A | 45 | 83.77 | noncoding | Transition | 0/1 | Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) |
| Scaffold_3140 | 5007 | A | G | 19 | 55.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 5012 | T | C | 19 | 60.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 5174 | G | A | 66 | 935.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 5512 | A | G | 95 | 419.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 5541 | C | T | 72 | 458.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3140 | 5548 | G | A | 49 | 128.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3155 | 20067 | T | C | 15 | 108.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3155 | 20167 | T | C | 19 | 115.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3155 | 20228 | A | G | 19 | 134.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3156 | 19662 | G | A | 33 | 116.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3160 | 21121 | G | A | 124 | 251.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3160 | 21130 | T | C | 118 | 2638.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3160 | 21150 | A | G | 100 | 2226.77 | exon | Transition | 0/1 | Unannotated |