| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3187 | 18248 | G | A | 69 | 409.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3190 | 40384 | A | G | 104 | 31.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3192 | 76 | T | C | 250 | 446.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3192 | 100 | T | C | 250 | 255.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3192 | 194 | T | C | 249 | 626.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3197 | 12795 | G | A | 30 | 31.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3200 | 7781 | C | T | 29 | 624.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3203 | 27967 | A | G | 10 | 120.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3209 | 29624 | C | T | 19 | 169.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3209 | 29641 | G | A | 19 | 180.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3219 | 33773 | T | C | 16 | 42.77 | CDS | Transition | 0/1 | DNA (cytosine-5)-methyltransferase 3 (EC 2.1.1.37) (DNA methyltransferase 3) (DNA methyltransferase III) (Protein MATERNAL EFFECT EMBRYO ARREST 57) |
| Scaffold_3221 | 36350 | C | T | 13 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41081 | G | A | 20 | 259.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3236 | 35110 | C | T | 23 | 550.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35174 | T | C | 12 | 34.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3240 | 43592 | A | G | 111 | 920.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3240 | 43601 | G | A | 110 | 848.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3243 | 72828 | T | C | 41 | 395.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_3243 | 73089 | A | G | 41 | 239.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_3243 | 73294 | G | A | 47 | 227.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |