| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3274 | 56993 | C | T | 250 | 854.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3274 | 57001 | G | A | 250 | 551.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3279 | 31246 | G | A | 12 | 53.77 | intron | Transition | 0/1 | 65-kDa microtubule-associated protein 5 (AtMAP65-5) |
| Scaffold_3280 | 3899 | T | C | 16 | 220.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3280 | 4354 | A | G | 20 | 160.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3280 | 4363 | G | A | 20 | 340.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3280 | 6165 | G | A | 174 | 2588.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3280 | 6216 | A | G | 91 | 490.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3280 | 6230 | G | A | 76 | 396.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3284 | 29267 | T | C | 14 | 324.41 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3287 | 31540 | A | G | 12 | 169.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 35580 | A | G | 17 | 162.77 | CDS | Transition | 0/1 | Cellulose synthase A catalytic subunit 4 [UDP-forming] (AtCesA4) (EC 2.4.1.12) (Protein IRREGULAR XYLEM 5) (AtIRX5) |
| Scaffold_3301 | 36120 | T | C | 144 | 137.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3302 | 3215 | A | G | 30 | 754.18 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3306 | 29053 | C | T | 80 | 268.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3306 | 29078 | G | A | 104 | 585.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3306 | 29153 | A | G | 71 | 182.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3306 | 29159 | A | G | 71 | 149.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3308 | 19070 | T | C | 250 | 2188.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3312 | 8861 | C | T | 12 | 184.77 | exon | Transition | 0/1 | Unannotated |