| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3324 | 32295 | T | C | 11 | 158.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3325 | 37216 | A | G | 104 | 233.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3325 | 58026 | A | G | 97 | 65.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3326 | 12466 | A | G | 86 | 450.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12528 | C | T | 132 | 1102.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12613 | T | C | 132 | 1771.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12727 | T | C | 150 | 1818.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12781 | A | G | 128 | 1490.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12841 | C | T | 75 | 536.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12861 | T | C | 74 | 116.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3329 | 42449 | G | A | 56 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3339 | 5859 | C | T | 54 | 730.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3343 | 18298 | G | A | 26 | 143.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3343 | 18429 | C | T | 16 | 262.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3355 | 44396 | C | T | 11 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3355 | 44805 | C | T | 29 | 559.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3358 | 30330 | T | C | 12 | 331.53 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3362 | 2826 | T | C | 250 | 819.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3362 | 2857 | A | G | 250 | 2883.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3362 | 3088 | C | T | 31 | 270.77 | intron | Transition | 0/1 | Unannotated |