| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3426 | 579 | G | A | 77 | 409.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3431 | 49480 | C | T | 159 | 3494.77 | noncoding | Transition | 0/1 | 30S ribosomal protein S14, chloroplastic |
| Scaffold_3435 | 27508 | G | A | 14 | 229.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3435 | 27699 | T | C | 42 | 41.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 38650 | T | C | 23 | 444.77 | CDS | Transition | 0/1 | Signal recognition particle 54 kDa protein 2 (SRP54) |
| Scaffold_3436 | 38659 | A | G | 23 | 435.77 | CDS | Transition | 0/1 | Signal recognition particle 54 kDa protein 2 (SRP54) |
| Scaffold_3436 | 55243 | G | A | 13 | 195.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 55276 | C | T | 16 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3438 | 44929 | T | C | 23 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3440 | 13693 | C | T | 17 | 425.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3440 | 34645 | A | G | 33 | 147.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3440 | 38102 | A | G | 38 | 260.77 | intron | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 38130 | C | T | 97 | 762.77 | intron | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 38208 | C | T | 151 | 2691.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 38217 | A | G | 128 | 2222.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 52000 | C | T | 26 | 330.77 | noncoding | Transition | 0/1 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2) (AtPAS2) (HACD) (HCD) (Protein PEPINO) (PEP) (Protein tyrosine phosphatase-like protein) |
| Scaffold_3440 | 52432 | A | G | 37 | 686.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3461 | 55078 | A | G | 62 | 266.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3461 | 55285 | A | G | 102 | 1052.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3461 | 55337 | A | G | 46 | 52.77 | exon | Transition | 0/1 | Unannotated |