| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3516 | 68293 | T | C | 150 | 3552.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3516 | 68326 | G | A | 124 | 767.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3516 | 68398 | T | C | 43 | 226.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3528 | 2494 | C | T | 14 | 142.77 | noncoding | Transition | 0/1 | ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6) |
| Scaffold_3536 | 24031 | T | C | 60 | 729.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3536 | 24040 | G | A | 58 | 657.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3536 | 24616 | G | A | 35 | 350.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3536 | 24618 | G | A | 34 | 295.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3536 | 24872 | T | C | 28 | 441.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3536 | 34097 | A | G | 223 | 1528.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3538 | 30703 | T | C | 11 | 80.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3542 | 28859 | T | C | 29 | 162.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3542 | 28889 | G | A,C | 12 | 377.77 | CDS | Transition | 1/2 | Unannotated |
| Scaffold_3544 | 3033 | C | T | 22 | 422.77 | CDS | Transition | 0/1 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 3146 | C | T | 47 | 869.77 | CDS | Transition | 0/1 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 43472 | A | G | 21 | 507.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3545 | 8501 | G | A,C | 39 | 4100.77 | noncoding | Transition | 1/2 | Unannotated |
| Scaffold_3545 | 8509 | T | C | 248 | 272.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3545 | 8540 | T | C | 248 | 4011.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3545 | 8560 | C | T | 250 | 422.77 | noncoding | Transition | 0/1 | Unannotated |