| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3673 | 6986 | A | G | 149 | 2030.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 7047 | A | G | 73 | 232.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 7125 | T | C | 73 | 642.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 7170 | A | G | 49 | 669.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 7858 | G | A | 21 | 388.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 8844 | G | A | 79 | 776.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 8861 | C | T | 85 | 1738.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 8913 | G | A | 71 | 286.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 9063 | A | G | 22 | 107.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 9079 | A | G | 11 | 232.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 11522 | C | T | 34 | 712.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3673 | 11812 | C | T | 11 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3674 | 4197 | G | A | 10 | 182.18 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3678 | 394 | G | A | 113 | 368.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3678 | 590 | T | C | 177 | 610.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3683 | 32545 | G | A | 10 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3691 | 51574 | G | A | 11 | 123.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3691 | 51678 | A | G | 28 | 560.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3691 | 51792 | C | T | 42 | 44.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3693 | 47965 | T | C | 27 | 93.77 | exon | Transition | 0/1 | Unannotated |