| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3733 | 44283 | T | C | 48 | 314.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44333 | A | G | 34 | 570.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44437 | C | T | 39 | 134.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44563 | G | A | 19 | 91.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44668 | C | T | 24 | 67.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44673 | G | A | 28 | 138.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3733 | 44757 | G | A | 47 | 172.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3739 | 38286 | A | G | 16 | 369.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3740 | 41311 | T | C | 36 | 254.77 | noncoding | Transition | 0/1 | Uncharacterized protein At1g01500 |
| Scaffold_3740 | 41675 | C | T | 98 | 2085.77 | noncoding | Transition | 0/1 | Uncharacterized protein At1g01500 |
| Scaffold_3743 | 16525 | A | G | 10 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3749 | 54808 | G | A | 106 | 774.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3749 | 54884 | T | C | 118 | 1976.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3749 | 54919 | C | T | 113 | 1874.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 4835 | T | C | 84 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 4994 | T | C | 96 | 212.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 5016 | A | G | 115 | 509.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 5201 | G | A | 88 | 1245.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 5312 | G | A | 86 | 660.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3752 | 5351 | A | G | 63 | 112.77 | CDS | Transition | 0/1 | Unannotated |