| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3763 | 3718 | T | C | 217 | 4911.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3763 | 3735 | A | G | 12 | 69.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3763 | 3751 | G | A | 16 | 127.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3763 | 37575 | T | C | 101 | 1990.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 37587 | A | G | 156 | 2706.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 37692 | T | C | 74 | 331.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 38914 | C | T | 197 | 809.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3770 | 57198 | A | G | 13 | 297.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 12503 | T | C | 31 | 309.77 | CDS | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3771 | 13002 | G | A | 83 | 1007.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 13030 | T | C | 50 | 305.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 13465 | C | T | 10 | 236.98 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 13484 | C | T | 13 | 116.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 13579 | G | A | 21 | 227.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3783 | 20395 | C | T | 68 | 877.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3783 | 20451 | T | C | 70 | 300.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3783 | 20460 | A | G | 89 | 844.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3784 | 50587 | C | T | 68 | 156.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3789 | 20401 | G | A | 153 | 207.77 | CDS | Transition | 0/1 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3789 | 20458 | C | T | 250 | 1829.77 | CDS | Transition | 0/1 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |