| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3789 | 20867 | A | G | 25 | 156.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3789 | 21075 | G | A | 116 | 488.77 | CDS | Transition | 0/1 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3789 | 21098 | T | C | 180 | 1102.77 | CDS | Transition | 0/1 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3789 | 21459 | G | A | 38 | 458.77 | CDS | Transition | 0/1 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3791 | 15982 | G | A | 14 | 307.89 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3791 | 31604 | A | G | 12 | 74.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3791 | 31656 | C | T | 19 | 222.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3791 | 31754 | C | T | 14 | 187.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3791 | 31902 | T | C | 13 | 79.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3791 | 32099 | G | A | 19 | 331.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 341 | T | C | 56 | 1143.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 342 | T | C | 56 | 1184.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 497 | T | C | 115 | 1418.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 874 | C | T | 250 | 797.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 955 | T | C | 250 | 3421.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 994 | A | G | 249 | 4656.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 1128 | T | C | 243 | 2498.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 1135 | A | G | 250 | 2518.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3794 | 1185 | A | G | 250 | 4020.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3798 | 5902 | A | G | 10 | 91.77 | CDS | Transition | 0/1 | 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) |