| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3862 | 36103 | A | G | 194 | 2734.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 36136 | A | G | 127 | 931.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 36205 | G | A | 31 | 739.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3862 | 44161 | T | C | 70 | 77.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3863 | 28657 | T | C | 34 | 33.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3863 | 28717 | T | C | 13 | 160.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3867 | 8020 | A | G | 162 | 1141.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3867 | 8205 | G | A | 29 | 242.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3867 | 10321 | C | T | 113 | 46.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3871 | 33252 | T | C | 16 | 206.77 | noncoding | Transition | 0/1 | Plastidial pyruvate kinase 4, chloroplastic (PKp4) (EC 2.7.1.40) |
| Scaffold_3873 | 47744 | C | T | 50 | 130.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 47794 | C | T | 64 | 1069.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 47874 | G | A | 43 | 949.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 47913 | A | G | 32 | 75.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 47938 | T | C | 15 | 173.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 48074 | G | A | 43 | 420.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 48135 | C | T | 26 | 91.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 49068 | T | C | 15 | 365.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 49073 | A | G | 18 | 359.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 49127 | A | G | 14 | 46.77 | exon | Transition | 0/1 | Unannotated |