| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3873 | 49156 | G | A | 32 | 196.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3881 | 54320 | A | G | 59 | 601.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3881 | 54369 | A | G | 36 | 414.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3893 | 3648 | C | T | 92 | 1286.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3893 | 3710 | T | C | 245 | 839.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3894 | 33748 | C | T | 250 | 3854.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3894 | 33754 | G | A | 250 | 1443.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3894 | 33813 | G | A | 80 | 147.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3895 | 52152 | G | A | 10 | 93.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3895 | 52164 | T | C | 12 | 165.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3895 | 52225 | A | G | 24 | 391.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3895 | 52239 | A | G | 22 | 380.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3903 | 15888 | A | G | 12 | 77.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3903 | 15921 | G | A | 15 | 127.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3903 | 15927 | G | A | 15 | 194.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3903 | 18665 | C | T | 248 | 652.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3903 | 26985 | G | A | 11 | 119.77 | noncoding | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g07650 (EC 2.7.11.1) |
| Scaffold_3903 | 42001 | C | T | 76 | 35.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3905 | 43723 | C | T | 126 | 675.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3905 | 43899 | G | A | 175 | 1601.77 | noncoding | Transition | 0/1 | Unannotated |