| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3934 | 12742 | A | G | 250 | 3762.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3934 | 12786 | G | A | 250 | 1798.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3934 | 12933 | T | C | 21 | 465.1 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3937 | 2990 | C | T | 96 | 165.77 | CDS | Transition | 0/1 | NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) |
| Scaffold_3937 | 17475 | G | A | 16 | 216.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3948 | 6456 | G | A | 16 | 42.77 | exon | Transition | 0/1 | Protein transport protein SEC16A homolog (Protein MAIGO 5) |
| Scaffold_3950 | 90733 | C | T | 12 | 111.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35687 | A | G | 24 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35748 | C | T | 40 | 122.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35788 | C | T | 33 | 210.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35810 | T | C | 25 | 298.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35820 | T | C | 25 | 289.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 35901 | G | A | 38 | 107.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 36135 | A | G | 65 | 440.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 36190 | C | T | 61 | 73.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 36209 | T | C | 58 | 118.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 36246 | G | A | 50 | 106.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 36360 | C | T | 26 | 412.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 65234 | C | T | 55 | 751.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3954 | 65291 | T | C | 115 | 1347.77 | exon | Transition | 0/1 | Unannotated |