| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_4006 | 4662 | T | C | 29 | 277.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4739 | C | T | 30 | 292.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4798 | G | A | 26 | 76.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4862 | C | T | 24 | 95.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4931 | T | C | 16 | 114.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4007 | 73018 | G | A | 37 | 58.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4009 | 13643 | C | T | 21 | 361.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_4013 | 3549 | G | A | 10 | 75.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4013 | 3572 | T | C | 11 | 113.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4013 | 3884 | C | T | 38 | 355.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_4013 | 4098 | G | A | 113 | 1013.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_4013 | 4125 | A | G | 106 | 1655.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_4015 | 4022 | T | C | 49 | 353.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4015 | 4055 | G | A | 36 | 306.77 | noncoding | Transition | 0/1 | Unannotated |