| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_6 | 413230 | C | A | 53 | 369.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 413930 | A | C | 70 | 584.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 522098 | T | G | 10 | 98.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 526863 | C | A | 19 | 63.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 553801 | G | C | 16 | 360.74 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 582301 | A | C | 10 | 124.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 718474 | T | A | 64 | 388.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 718476 | A | C | 57 | 128.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 753322 | T | G | 39 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 813840 | G | C | 55 | 518.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 814401 | C | G | 54 | 307.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 814402 | A | T | 62 | 440.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1010294 | A | T | 15 | 118.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1053465 | C | A | 11 | 211.18 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1318443 | C | G | 10 | 117.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1331513 | G | C | 13 | 162.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1686829 | C | G | 80 | 686.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1686832 | C | A | 38 | 128.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1701124 | G | T | 38 | 151.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 1714953 | T | A | 22 | 153.77 | exon | Transversion | 0/1 | Glycerol-3-phosphate acyltransferase 1 (AtGPAT1) (EC 2.3.1.15) |