| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_37 | 425601 | A | C | 93 | 1287.98 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_37 | 491650 | A | C | 10 | 48.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_37 | 1035527 | A | T | 34 | 149.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_37 | 1035595 | T | G | 31 | 33.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_37 | 1163255 | G | C | 18 | 153.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_37 | 1410779 | A | C | 11 | 99.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 39569 | T | G | 12 | 126.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 39597 | G | T | 21 | 135.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 55049 | C | A | 11 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 56622 | T | G | 71 | 766.77 | CDS | Transversion | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 56631 | T | G | 68 | 627.77 | CDS | Transversion | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 56703 | T | A | 16 | 103.77 | CDS | Transversion | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 212572 | C | A | 18 | 215.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 282476 | A | C | 10 | 121.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 282480 | A | T | 38 | 714.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 296761 | G | C | 11 | 154.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 326297 | G | C | 10 | 51.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 886840 | C | G | 41 | 787.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 887104 | G | T | 142 | 3254.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_38 | 887281 | A | C | 29 | 38.77 | noncoding | Transversion | 0/1 | Unannotated |