| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_45 | 1517911 | A | C | 16 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1829611 | G | T | 14 | 59.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 43885 | G | T | 11 | 109.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 85326 | G | T | 31 | 203.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 149262 | T | G | 72 | 475.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 255585 | G | T | 10 | 217.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 353375 | A | T | 15 | 221.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 419965 | C | G | 16 | 232.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 461969 | A | C | 20 | 381.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 497652 | A | T | 18 | 342.77 | CDS | Transversion | 0/1 | Protein NRT1/ PTR FAMILY 2.11 (AtNPF2.11) (Nitrate transporter 1.10) (Protein GLUCOSINOLATE TRANSPORTER-2) |
| Scaffold_46 | 498142 | A | C | 35 | 384.77 | CDS | Transversion | 0/1 | Protein NRT1/ PTR FAMILY 2.11 (AtNPF2.11) (Nitrate transporter 1.10) (Protein GLUCOSINOLATE TRANSPORTER-2) |
| Scaffold_46 | 514301 | C | G | 40 | 514.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 542199 | T | G | 27 | 578.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 543002 | G | T | 27 | 519.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 606825 | T | G | 21 | 130.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 633118 | C | A | 53 | 1338.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 633121 | C | A | 20 | 247.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 767415 | A | C | 26 | 74.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 796813 | G | T | 12 | 204.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_46 | 1105615 | G | T | 12 | 311.03 | intron | Transversion | 0/1 | Unannotated |