| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_48 | 231855 | G | T | 18 | 181.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 232295 | T | A | 13 | 47.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 232425 | G | C | 16 | 400.79 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 386024 | T | G | 52 | 757.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 386027 | A | C | 53 | 680.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 404761 | T | A | 36 | 845.56 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 587493 | C | A | 47 | 114.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 587496 | T | A | 29 | 534.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 681139 | C | A | 12 | 164.77 | CDS | Transversion | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1) |
| Scaffold_48 | 753736 | T | A | 40 | 45.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1061970 | C | A | 38 | 211.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1107032 | T | A | 13 | 105.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1111688 | T | A | 55 | 93.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1128413 | G | C | 75 | 837.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1323328 | A | T | 16 | 166.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1421975 | C | G | 250 | 206.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1728795 | T | A | 24 | 460.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1728804 | G | C | 28 | 206.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1729151 | G | C | 68 | 753.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1729180 | A | C | 54 | 791.77 | CDS | Transversion | 0/1 | Unannotated |