| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_50 | 933213 | T | A | 47 | 426.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1104643 | T | G | 13 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1105472 | C | G | 107 | 354.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1134824 | G | C | 38 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1216435 | G | C | 160 | 644.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1216460 | A | T | 113 | 515.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1221169 | A | C | 13 | 182.28 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1222356 | A | C | 101 | 1584.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1548202 | G | T | 11 | 56.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1548204 | T | A | 17 | 264.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1548371 | T | A | 13 | 249.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 22882 | A | C | 15 | 118.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 24777 | T | G | 32 | 412.77 | intron | Transversion | 0/1 | Protein translocase subunit SecA, chloroplastic |
| Scaffold_51 | 44937 | T | G | 10 | 90.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 109357 | A | C | 28 | 193.77 | noncoding | Transversion | 0/1 | Cytochrome P450 709B3 (EC 1.14.-.-) |
| Scaffold_51 | 173555 | T | A | 46 | 56.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 188678 | G | C | 16 | 147.77 | intron | Transversion | 0/1 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 188680 | A | T | 14 | 40.77 | intron | Transversion | 0/1 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 268011 | T | A | 27 | 69.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 269647 | A | C | 15 | 40.77 | intron | Transversion | 0/1 | Unannotated |