| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_59 | 1524811 | A | C | 99 | 674.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_60 | 374093 | A | T | 29 | 272.77 | intron | Transversion | 0/1 | Oxygen-evolving enhancer protein 1, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (OEC 33 kDa subunit) |
| Scaffold_60 | 987535 | A | T | 34 | 85.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_60 | 990564 | G | C | 49 | 43.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_60 | 1300379 | C | G | 250 | 281.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_60 | 1300666 | T | A | 18 | 53.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_60 | 1384671 | T | A | 13 | 167.77 | intron | Transversion | 0/1 | Primary amine oxidase (EC 1.4.3.21) (Amine oxidase [copper-containing]) |
| Scaffold_60 | 1389131 | A | T | 185 | 146.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 14314 | G | T | 250 | 2412.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 15225 | C | A | 40 | 943.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 15318 | A | T | 48 | 1010.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 27941 | A | C | 17 | 33.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 659629 | G | C | 17 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 752638 | T | A | 69 | 135.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1250638 | G | T | 10 | 190.8 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1252469 | G | C | 25 | 629.78 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1252470 | G | C | 18 | 280.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1253202 | G | C | 40 | 366.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1253204 | A | C | 26 | 525.41 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1253737 | C | G | 15 | 197.77 | intron | Transversion | 0/1 | Unannotated |