| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_75 | 22630 | A | T | 13 | 195.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_75 | 231649 | G | T | 15 | 336.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_75 | 231651 | G | C | 15 | 283.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_77 | 125766 | G | T | 22 | 267.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_77 | 125767 | C | G | 20 | 137.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 34045 | G | C | 12 | 303.31 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 34144 | A | T | 10 | 54.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 34407 | T | G | 21 | 350.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 34903 | T | A | 10 | 212.77 | intron | Transversion | 0/1 | Cellulose synthase-like protein D4 (EC 2.4.1.-) (OsCslD4) |
| Scaffold_78 | 35127 | C | A | 19 | 422.77 | intron | Transversion | 0/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_78 | 52302 | A | T | 14 | 257.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 53073 | G | C | 19 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 95837 | A | T | 16 | 321.77 | intron | Transversion | 0/1 | Cytochrome b5 |
| Scaffold_78 | 115212 | T | A | 51 | 798.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 115377 | T | G | 71 | 476.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 115646 | A | T | 182 | 4111.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_78 | 162011 | G | T | 70 | 1346.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_79 | 87338 | T | A | 25 | 119.77 | CDS | Transversion | 0/1 | Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7) (NHE-7) (Protein SALT OVERLY SENSITIVE 1) |
| Scaffold_80 | 1911 | T | A | 12 | 153.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_80 | 6842 | A | C | 76 | 60.77 | exon | Transversion | 0/1 | Unannotated |