| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_94 | 89277 | G | C | 49 | 47.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 323997 | C | A | 15 | 33.77 | CDS | Transversion | 0/1 | Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II) |
| Scaffold_94 | 352052 | C | A | 94 | 319.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_95 | 228961 | G | T | 47 | 301.77 | exon | Transversion | 0/1 | Scarecrow-like protein 1 (AtSCL1) (GRAS family protein 4) (AtGRAS-4) |
| Scaffold_95 | 347586 | G | C | 14 | 42.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_96 | 132334 | A | T | 31 | 593.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_96 | 155676 | A | C | 27 | 175.77 | exon | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 155767 | A | T | 31 | 489.77 | exon | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At1g12775, mitochondrial |
| Scaffold_96 | 260561 | A | T | 39 | 240.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_97 | 225910 | C | A | 40 | 67.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 177571 | T | A | 52 | 188.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 178906 | A | T | 20 | 72.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 178907 | A | C | 34 | 275.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 294935 | A | C | 19 | 53.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29786 | T | A | 116 | 101.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29808 | T | A | 250 | 3859.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29809 | A | C | 250 | 4965.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29974 | A | C | 250 | 70.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 58329 | T | G | 17 | 30.77 | CDS | Transversion | 0/1 | Probable nucleoredoxin 1 (AtNrx1) (EC 1.8.1.8) |
| Scaffold_100 | 105525 | T | A | 14 | 81.77 | exon | Transversion | 0/1 | Unannotated |