| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_112 | 78962 | C | A | 156 | 1005.77 | CDS | Transversion | 0/1 | Mannan endo-1,4-beta-mannosidase 7 (EC 3.2.1.78) (Beta-mannanase 7) (Endo-beta-1,4-mannanase 7) (AtMAN7) |
| Scaffold_112 | 173953 | T | A | 36 | 951.56 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 173987 | A | T | 37 | 474.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 174102 | T | G | 56 | 207.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 174146 | T | G | 68 | 420.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 174161 | T | A | 68 | 272.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 176046 | G | C | 50 | 155.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 178672 | A | C | 14 | 70.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 178691 | G | T | 12 | 59.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 264476 | T | A | 10 | 194.53 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 268380 | A | C | 24 | 341.77 | CDS | Transversion | 0/1 | Probable protein phosphatase 2C 6 (AtPP2C06) (EC 3.1.3.16) |
| Scaffold_112 | 269009 | T | G | 15 | 87.77 | intron | Transversion | 0/1 | Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16) |
| Scaffold_112 | 269319 | T | G | 11 | 221.77 | intron | Transversion | 0/1 | Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16) |
| Scaffold_112 | 324197 | T | A | 57 | 123.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 324280 | A | T | 50 | 927.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 324325 | G | T | 26 | 162.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 428328 | A | T | 15 | 394.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_113 | 226743 | A | C | 10 | 178.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_114 | 16063 | T | A | 11 | 42.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_114 | 38830 | A | C | 28 | 203.77 | intron | Transversion | 0/1 | Unannotated |