List of pathways, genes and/or enzymes identified for

"Metabolism of Aromatic compounds"

Metagenome name: Kodo rhizosphere metagenome

Metagenome ID : mgm4776125.3

Crop: Kodo

S. No. Category Pathway Gene/Enzyme Name
1.Anaerobic degradation of aromatic compoundsAcetophenone carboxylase 1Acetophenone carboxylase subunit Apc4
2.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradationEthylbenzene dehydrogenase alpha subunit (EC 1.17.99.2)
3.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradationAcetophenone carboxylase subunit Apc1
4.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradation(R)-benzylsuccinyl-CoA dehydrogenase (EC 1.3.99.21)
5.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradationBenzoylsuccinyl-CoA thiolase beta subunit (EC:2.3.1.-)
6.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradation2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase beta subunit (EC 1.1.1.35)
7.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradationAcetophenone carboxylase subunit Apc2
8.Anaerobic degradation of aromatic compoundsAnaerobic toluene and ethylbenzene degradationBenzoylacetate CoA-ligase
9.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolismCyclohex-1-ene-1-carboxyl-CoA hydratase (EC 4.2.1.17)
10.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolismBenzoyl-CoA reductase subunit BadF (EC 1.3.99.15)
11.Anaerobic degradation of aromatic compoundsAcetophenone carboxylase 1Acetophenone carboxylase subunit Apc3
12.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolismGlutaryl-CoA dehydrogenase (EC 1.3.99.7)
13.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolismBenzoate-CoA ligase (EC 6.2.1.25)
14.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolism2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-)
15.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolism2-ketocyclohexanecarboxyl-CoA hydrolase (EC 4.1.3.36)
16.Anaerobic degradation of aromatic compoundsAnaerobic benzoate metabolismBenzoyl-CoA reductase subunit BadE (EC 1.3.99.15)
17.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathwayPca regulon regulatory protein PcaR
18.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathway3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)
19.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathwayProtocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
20.Metabolism of central aromatic intermediatesN-heterocyclic aromatic compound degradationIsoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)
21.Metabolism of central aromatic intermediatesHomogentisate pathway of aromatic compound degradationPossible 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)
22.Metabolism of central aromatic intermediatesHomogentisate pathway of aromatic compound degradationAromatic-amino-acid aminotransferase (EC 2.6.1.57)
23.Metabolism of central aromatic intermediatesHomogentisate pathway of aromatic compound degradationTranscriptional regulator, IclR family
24.Metabolism of central aromatic intermediatesHomogentisate pathway of aromatic compound degradation4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
25.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathwayBeta-ketoadipyl CoA thiolase (EC 2.3.1.-)
26.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathway4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
27.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathway3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
28.Metabolism of central aromatic intermediatesSalicylate and gentisate catabolismFumarylacetoacetate (FAA) hydrolase (EC 3.7.1.5)
29.Metabolism of central aromatic intermediatesSalicylate and gentisate catabolismMaleate cis-trans isomerase (EC 5.2.1.1)
30.Metabolism of central aromatic intermediatesSalicylate and gentisate catabolismFumarylacetoacetate (FAA) hydrolase (EC 4.1.1.68)
31.Metabolism of central aromatic intermediatesSalicylate and gentisate catabolismsalicylate esterase
32.Metabolism of central aromatic intermediatesSalicylate and gentisate catabolismGentisate 1,2-dioxygenase (EC 1.13.11.4)
33.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathway3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
34.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathwaydicarboxylic acid transporter PcaT
35.Metabolism of central aromatic intermediatesProtocatechuate branch of beta-ketoadipate pathwayProtocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
36.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradationIntradiol ring-cleavage dioxygenase (EC 1.13.11.1)
37.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradationProtocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
38.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwayCatechol 1,2-dioxygenase 1 (EC 1.13.11.1)
39.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwayBeta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)
40.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwaySuccinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
41.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwaymandelate racemase/muconate lactonizing enzyme family protein
42.Metabolism of central aromatic intermediates4-Hydroxyphenylacetic acid catabolic pathwayHomoprotocatechuate degradative operon repressor
43.Metabolism of central aromatic intermediates4-Hydroxyphenylacetic acid catabolic pathway4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS)
44.Metabolism of central aromatic intermediates4-Hydroxyphenylacetic acid catabolic pathway5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10)
45.Metabolism of central aromatic intermediates4-Hydroxyphenylacetic acid catabolic pathway4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)
46.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwayCatechol 1,2-dioxygenase (EC 1.13.11.1)
47.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathway3-oxoadipate enol-lactone hydrolase
48.Metabolism of central aromatic intermediatesCatechol branch of beta-ketoadipate pathwayMuconolactone isomerase (EC 5.3.3.4),putative
49.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
50.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation4-oxalocrotonate tautomerase (EC 5.3.2.-)
51.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15)
52.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9)
53.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation3,4-dihydroxyphenylacetate 2,3-dioxygenase
54.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradationCatechol 2,3-dioxygenase (EC 1.13.11.2)
55.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradationProtocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
56.Metabolism of central aromatic intermediatesCentral meta-cleavage pathway of aromatic compound degradation5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)
57.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetaldehyde dehydrogenase (EC 1.2.1.39)
58.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-CoA oxygenase, PaaI subunit
59.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-CoA oxygenase/reductase, PaaK subunit
60.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF
61.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-CoA oxygenase, PaaG subunit
62.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
63.NULLp-cymene degradationHCOMODA decarboxylase
64.NULLp-cymene degradationp-cumic aldehyde dehydrogenase (CymC) [EC:1.2.1.3]
65.NULLp-cymene degradationp-cumic alcohol dehydrogenase (CymB)
66.NULLp-cymene degradationP-cymene monooxygenase, reductase subunit(CymAb) (EC 1.17.1.-)
67.NULLGentisare degradationPutative n-hydroxybenzoate hydroxylase
68.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate degradation enoyl-CoA hydratase PaaB (EC 4.2.1.17)
69.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-CoA oxygenase, PaaH subunit
70.NULLToluene 4-monooxygenase (T4MO)Toluene-4-monooxygenase, subunit TmoA
71.NULLPhenylacetyl-CoA catabolic pathway (core)Acetate permease ActP (cation/acetate symporter) PaaL
72.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation operon negative regulatory protein PaaX
73.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation protein PaaY
74.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation protein PaaN2, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
75.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17)
76.NULLPhenylacetyl-CoA catabolic pathway (core)3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-)
77.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation protein PaaE, ketothiolase
78.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetate-CoA oxygenase, PaaJ subunit
79.NULLPhenylacetyl-CoA catabolic pathway (core)Phenylacetic acid degradation protein PaaD, thioesterase
80.NULLToluene 4-monooxygenase (T4MO)Toluene-4-monooxygenase, subunit TmoF
81.NULLGentisare degradationputative 4-hydroxybenzoyl-CoA thioesterase
82.NULLBenzoate transport and degradation clusterBenzoate transport, extracellular ligand-binding receptor
83.NULLBenzoate transport and degradation clusterBenzoate transport, inner-membrane translocator
84.NULLBenzoate transport and degradation cluster4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20)
85.NULLBenzoate transport and degradation clusterPredicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
86.NULLBenzoate transport and degradation cluster2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
87.NULLBenzoate transport and degradation cluster4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20)
88.NULLBenzoate transport and degradation clusterBenzoyl-CoA oxygenase component B
89.NULLBenzoate transport and degradation clusterbenzoyl-CoA-dihydrodiol lyase (BoxC)
90.NULLAromatic Amin CatabolismNitrilotriacetate monooxygenase component B (EC 1.14.13.-)
91.NULLAromatic Amin CatabolismAldehyde dehydrogenase (EC 1.2.1.3), PaaZ
92.NULLBenzoate transport and degradation clusterbenzoate degradation ring-cleavage hydrolase
93.NULLBenzoate transport and degradation clusterBenzoate transport, ATP binding protein
94.NULLBenzoate transport and degradation clusterRegulatory protein of benzoate catabolism
95.NULLGentisare degradationFumarylacetoacetate hydrolase family protein
96.NULLcarbazol degradation cluster4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.-)
97.NULLBenzoate transport and degradation clusterFIG094199: Fumarylacetoacetate hydrolase
98.NULLBenzoate transport and degradation clusterBenzoate transport, inner membrane transport component
99.NULLBenzoate transport and degradation clusterBenzoate transport, inner-membrane translocator precursor
100.NULLBenzoate transport and degradation clusterBenzoate transport, ATPase component
101.NULLBenzoate transport and degradation clusterBenzoate transport related protein
102.NULLBenzoate transport and degradation cluster3-hydroxyacyl-CoA dehydrogenase (PaaH) (EC 1.1.1.157)
103.NULLBenzoate transport and degradation clusterBenzoyl-CoA oxygenase component A
104.NULLBenzoate transport and degradation cluster4-oxalocrotonate decarboxylase (EC 4.1.1.77)
105.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationProbable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)
106.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationVanillate O-demethylase oxidoreductase (EC 1.14.13.-)
107.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationPutative phthalate 4,5-dioxygenase oxygenase subunit (OhpA2)
108.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationProbable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-)
109.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationVanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
110.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationFeruloyl-CoA synthetase
111.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationPhenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
112.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationLignostilbene-alpha,beta-dioxygenase and related enzymes
113.Peripheral pathways for catabolism of aromatic compoundsPhenol hydroxylasePhenol hydroxylase, P1 oxygenase component DmpL (EC 1.14.13.7)
114.Peripheral pathways for catabolism of aromatic compoundsPhenol hydroxylasePhenol hydroxylase, P3 oxygenase component DmpN (EC 1.14.13.7)
115.Peripheral pathways for catabolism of aromatic compoundsPhenol hydroxylasePositive regulator of phenol hydroxylase
116.Peripheral pathways for catabolism of aromatic compoundsn-Phenylalkanoic acid degradationenoyl-CoA hydratase, R-specific
117.Peripheral pathways for catabolism of aromatic compoundsn-Phenylalkanoic acid degradationPutative 3-hydroxyacyl-coa dehydrogenase
118.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradation4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17)
119.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationlignostilbene-alpha,beta-dioxygenase
120.Peripheral pathways for catabolism of aromatic compoundsToluene degradationtoluenesulfonate zinc-independent alcohol dehydrogenase
121.Peripheral pathways for catabolism of aromatic compoundsSalicylate ester degradationSalicylate hydroxylase (EC 1.14.13.1)
122.Peripheral pathways for catabolism of aromatic compoundsQuinate degradationShikimate 5-dehydrogenase (EC 1.1.1.25)
123.Peripheral pathways for catabolism of aromatic compoundsQuinate degradationQuinate permease
124.Peripheral pathways for catabolism of aromatic compoundsQuinate degradationQuinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
125.Peripheral pathways for catabolism of aromatic compoundsp-Hydroxybenzoate degradation4-hydroxybenzoate transporter
126.Peripheral pathways for catabolism of aromatic compoundsp-Hydroxybenzoate degradationP-hydroxybenzoate hydroxylase (EC 1.14.13.2)
127.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationputative 3-hydroxyphenylpropionic acid porine
128.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationPutative phthalate 4,5-dioxygenase reductase subunit (OhpA1)
129.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationPutative 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase oxidoreductase protein (EC 1.1.1.50)
130.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationChlorogenate esterase
131.Peripheral pathways for catabolism of aromatic compoundsPhenylpropanoid compound degradationvanillin dehydrogenase
132.Peripheral pathways for catabolism of aromatic compoundsToluene degradationToluate 1,2-dioxygenase alpha subunit
133.Peripheral pathways for catabolism of aromatic compoundsn-Phenylalkanoic acid degradationLong-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
134.Peripheral pathways for catabolism of aromatic compoundsBiphenyl DegradationBiphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39)
135.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationRing hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13)
136.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradation1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
137.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationBenzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
138.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationBenzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
139.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationOrtho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB
140.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationBenzoate transport protein
141.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationbenzoate MFS transporter BenK
142.Peripheral pathways for catabolism of aromatic compoundsBenzoate degradationBenzoylformate decarboxylase (EC 4.1.1.7)
143.Peripheral pathways for catabolism of aromatic compoundsBenzoate catabolism3-Oxoadipate enol-lactonase (EC 3.1.1.24)
144.Peripheral pathways for catabolism of aromatic compoundsBenzoate catabolismMuconolactone isomerase (EC 5.3.3.4)
145.Peripheral pathways for catabolism of aromatic compoundsBenzoate catabolismBenzoate 1,2-dioxygenase (EC 1.14.12.10)
146.Peripheral pathways for catabolism of aromatic compoundsBiphenyl Degradation2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)
147.Peripheral pathways for catabolism of aromatic compoundsBiphenyl DegradationAcetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol
148.Peripheral pathways for catabolism of aromatic compoundsNaphtalene and antracene degradationnaphthalene dioxygenase ferredoxin
149.Peripheral pathways for catabolism of aromatic compoundsNaphtalene and antracene degradationNaphthalene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component (EC 1.18.1.3)
150.Peripheral pathways for catabolism of aromatic compoundsNaphtalene and antracene degradationSalicylaldehyde dehydrogenase (EC 1.2.1.65)
151.Peripheral pathways for catabolism of aromatic compoundsNaphtalene and antracene degradation2-hydroxychromene-2-carboxylate isomerase
152.Peripheral pathways for catabolism of aromatic compoundsChlorobenzoate degradation2-chlorobenzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.13)
153.Peripheral pathways for catabolism of aromatic compoundsChlorobenzoate degradationPutative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)
154.Peripheral pathways for catabolism of aromatic compoundsChloroaromatic degradation pathway3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)
155.Peripheral pathways for catabolism of aromatic compoundsBiphenyl DegradationLarge subunit naph/bph dioxygenase
156.Peripheral pathways for catabolism of aromatic compoundsBiphenyl DegradationSmall subunit naph/bph dioxygenase
157.Peripheral pathways for catabolism of aromatic compoundsBiphenyl Degradationbiphenyl-2,3-diol 1,2-dioxygenase III-related protein
158.Peripheral pathways for catabolism of aromatic compoundsBiphenyl DegradationDihydrodiol dehydrogenase (EC 1.3.1.56)
159.Peripheral pathways for catabolism of aromatic compoundsBiphenyl Degradation2,3-dihydroxybiphenyl 1,2-dioxygenase
160.Peripheral pathways for catabolism of aromatic compoundsBenzoate catabolismAcetyl-CoA C-acyltransferase (EC 2.3.1.16)