List of genes/enzymes identified for Quinate degradation in different metagenome datasets

 

S. No. Metagenome Name Metagenome Id (MG-RAST or EBI Metagenomics) Genes/Enzymes Identified
1.10LMmgm4478038.33-dehydroquinate dehydratase I (EC 4.2.1.10)
2.10LMmgm4478038.33-dehydroshikimate dehydratase
3.11LMmgm4478222.33-dehydroquinate dehydratase I (EC 4.2.1.10)
4.11LMmgm4478222.33-dehydroshikimate dehydratase
5.12LMmgm4478283.33-dehydroquinate dehydratase I (EC 4.2.1.10)
6.12LMmgm4478283.33-dehydroshikimate dehydratase
7.13LMmgm4478290.33-dehydroshikimate dehydratase
8.13LMmgm4478290.33-dehydroquinate dehydratase I (EC 4.2.1.10)
9.14LMmgm4478292.33-dehydroquinate dehydratase I (EC 4.2.1.10)
10.14LMmgm4478292.33-dehydroshikimate dehydratase
11.15LMmgm4478291.33-dehydroquinate dehydratase I (EC 4.2.1.10)
12.15LMmgm4478291.33-dehydroshikimate dehydratase
13.16LMmgm4478294.33-dehydroshikimate dehydratase
14.16LMmgm4478294.33-dehydroquinate dehydratase I (EC 4.2.1.10)
15.17LMmgm4478936.33-dehydroquinate dehydratase I (EC 4.2.1.10)
16.17LMmgm4478936.33-dehydroshikimate dehydratase
17.18LMmgm4478937.33-dehydroquinate dehydratase I (EC 4.2.1.10)
18.18LMmgm4478937.33-dehydroshikimate dehydratase
19.19LMmgm4478938.33-dehydroshikimate dehydratase
20.19LMmgm4478938.33-dehydroquinate dehydratase I (EC 4.2.1.10)
21.1b_R1mgm4709737.33-dehydroshikimate dehydratase
22.1b_R1mgm4709737.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
23.1b_R2mgm4709735.33-dehydroshikimate dehydratase
24.1b_R2mgm4709735.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
25.1LMmgm4477751.33-dehydroquinate dehydratase I (EC 4.2.1.10)
26.1LMmgm4477751.33-dehydroshikimate dehydratase
27.1r_R2mgm4709741.33-dehydroquinate dehydratase I (EC 4.2.1.10)
28.20LMmgm4478939.33-dehydroquinate dehydratase I (EC 4.2.1.10)
29.20LMmgm4478939.33-dehydroshikimate dehydratase
30.21LMmgm4479311.33-dehydroquinate dehydratase I (EC 4.2.1.10)
31.21LMmgm4479311.33-dehydroshikimate dehydratase
32.22LMmgm4478940.33-dehydroquinate dehydratase I (EC 4.2.1.10)
33.22LMmgm4478940.33-dehydroshikimate dehydratase
34.23LMmgm4478941.33-dehydroshikimate dehydratase
35.23LMmgm4478941.33-dehydroquinate dehydratase I (EC 4.2.1.10)
36.24LMmgm4478943.33-dehydroquinate dehydratase I (EC 4.2.1.10)
37.24LMmgm4478943.33-dehydroshikimate dehydratase
38.2b_R1mgm4709729.33-dehydroquinate dehydratase I (EC 4.2.1.10)
39.2b_R1mgm4709729.33-dehydroshikimate dehydratase
40.2b_R2mgm4709728.33-dehydroshikimate dehydratase
41.2b_R2mgm4709728.33-dehydroquinate dehydratase I (EC 4.2.1.10)
42.2LMmgm4477749.33-dehydroquinate dehydratase I (EC 4.2.1.10)
43.2LMmgm4477749.33-dehydroshikimate dehydratase
44.2r_R1mgm4709742.33-dehydroquinate dehydratase I (EC 4.2.1.10)
45.2r_R2mgm4709727.33-dehydroquinate dehydratase I (EC 4.2.1.10)
46.2r_R2mgm4709727.33-dehydroshikimate dehydratase
47.3b_R2mgm4709738.33-dehydroquinate dehydratase I (EC 4.2.1.10)
48.3LMmgm4477755.33-dehydroquinate dehydratase I (EC 4.2.1.10)
49.3LMmgm4477755.33-dehydroshikimate dehydratase
50.3LMmgm4477755.3Quinate permease
51.3r_R1mgm4709734.33-dehydroshikimate dehydratase
52.3r_R1mgm4709734.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
53.3r_R2mgm4709740.33-dehydroquinate dehydratase I (EC 4.2.1.10)
54.4b_R1mgm4709733.33-dehydroshikimate dehydratase
55.4b_R1mgm4709733.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
56.4b_R2mgm4709736.33-dehydroshikimate dehydratase
57.4b_R2mgm4709736.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
58.4LMmgm4477757.33-dehydroquinate dehydratase I (EC 4.2.1.10)
59.4LMmgm4477757.33-dehydroshikimate dehydratase
60.4LMmgm4477757.3Quinate permease
61.4r_R1mgm4709731.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
62.4r_R1mgm4709731.33-dehydroshikimate dehydratase
63.4r_R2mgm4709726.33-dehydroquinate dehydratase I (EC 4.2.1.10)
64.4r_R2mgm4709726.33-dehydroshikimate dehydratase
65.5b_R1mgm4709730.33-dehydroquinate dehydratase I (EC 4.2.1.10)
66.5b_R1mgm4709730.33-dehydroshikimate dehydratase
67.5LMmgm4477789.3Quinate permease
68.5LMmgm4477789.33-dehydroshikimate dehydratase
69.5LMmgm4477789.33-dehydroquinate dehydratase I (EC 4.2.1.10)
70.6b_R1mgm4709739.33-dehydroquinate dehydratase I (EC 4.2.1.10)
71.6b_R2mgm4709743.33-dehydroquinate dehydratase I (EC 4.2.1.10)
72.6LMmgm4477790.3Quinate permease
73.6LMmgm4477790.33-dehydroshikimate dehydratase
74.6LMmgm4477790.33-dehydroquinate dehydratase I (EC 4.2.1.10)
75.6r_R1mgm4709732.33-dehydroshikimate dehydratase
76.6r_R1mgm4709732.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
77.6r_R2mgm4709725.33-dehydroquinate dehydratase I (EC 4.2.1.10)
78.6r_R2mgm4709725.33-dehydroshikimate dehydratase
79.7LMmgm4478030.3Quinate permease
80.7LMmgm4478030.33-dehydroshikimate dehydratase
81.7LMmgm4478030.33-dehydroquinate dehydratase I (EC 4.2.1.10)
82.8LMmgm4478037.33-dehydroquinate dehydratase I (EC 4.2.1.10)
83.8LMmgm4478037.33-dehydroshikimate dehydratase
84.8LMmgm4478037.3Quinate permease
85.9LMmgm4478934.3Quinate permease
86.9LMmgm4478934.33-dehydroshikimate dehydratase
87.9LMmgm4478934.33-dehydroquinate dehydratase I (EC 4.2.1.10)
88.BulkAG1mgm4615280.33-dehydroshikimate dehydratase
89.BulkAG2mgm4615281.33-dehydroshikimate dehydratase
90.BulkAG3mgm4615282.33-dehydroshikimate dehydratase
91.ERR566373ERS506647Repressor Protein of Quinate Catabolism
92.ERR566373ERS5066473-dehydroshikimate dehydratase
93.ERR566373ERS506647Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
94.ERR566373ERS506647Quinate permease
95.ERR566374ERS506648Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
96.ERR566374ERS5066483-dehydroshikimate dehydratase
97.ERR566374ERS506648Quinate permease
98.ERR566374ERS506648Repressor Protein of Quinate Catabolism
99.ERR566375ERS506649Quinate permease
100.ERR566375ERS5066493-dehydroshikimate dehydratase
101.ERR566375ERS506649Repressor Protein of Quinate Catabolism
102.ERR566375ERS506649Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
103.ERR566376ERS506650Repressor Protein of Quinate Catabolism
104.ERR566376ERS506650Quinate permease
105.ERR566376ERS5066503-dehydroshikimate dehydratase
106.ERR566376ERS506650Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
107.ERR566377ERS506651Quinate permease
108.ERR566377ERS5066513-dehydroshikimate dehydratase
109.ERR566377ERS506651Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
110.ERR566377ERS506651Repressor Protein of Quinate Catabolism
111.ERR566378ERS506652Repressor Protein of Quinate Catabolism
112.ERR566378ERS5066523-dehydroshikimate dehydratase
113.ERR566378ERS506652Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
114.ERR566378ERS506652Quinate permease
115.ERR566379ERS506653Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
116.ERR566379ERS506653Quinate permease
117.ERR566379ERS5066533-dehydroshikimate dehydratase
118.ERR566379ERS506653Repressor Protein of Quinate Catabolism
119.ERR566380ERS506654Repressor Protein of Quinate Catabolism
120.ERR566380ERS506654Quinate permease
121.ERR566380ERS506654Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
122.ERR566380ERS5066543-dehydroshikimate dehydratase
123.ERR566381ERS506655Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
124.ERR566381ERS506655Quinate permease
125.ERR566381ERS5066553-dehydroshikimate dehydratase
126.ERR566381ERS506655Repressor Protein of Quinate Catabolism
127.ERR566382ERS506656Repressor Protein of Quinate Catabolism
128.ERR566382ERS5066563-dehydroshikimate dehydratase
129.ERR566382ERS506656Quinate permease
130.ERR566382ERS506656Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
131.ERR566383ERS506657Repressor Protein of Quinate Catabolism
132.ERR566383ERS506657Quinate permease
133.ERR566383ERS5066573-dehydroshikimate dehydratase
134.ERR566383ERS506657Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
135.ERR566384ERS506658Quinate permease
136.ERR566384ERS506658Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
137.ERR566384ERS5066583-dehydroshikimate dehydratase
138.ERR566384ERS506658Repressor Protein of Quinate Catabolism
139.ERR566385ERS506659Repressor Protein of Quinate Catabolism
140.ERR566385ERS506659Quinate permease
141.ERR566385ERS506659Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
142.ERR566385ERS5066593-dehydroshikimate dehydratase
143.ERR566386ERS506660Repressor Protein of Quinate Catabolism
144.ERR566386ERS506660Quinate permease
145.ERR566386ERS5066603-dehydroshikimate dehydratase
146.ERR566386ERS506660Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
147.ERR566387ERS506661Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
148.ERR566387ERS5066613-dehydroshikimate dehydratase
149.ERR566387ERS506661Quinate permease
150.ERR566387ERS506661Repressor Protein of Quinate Catabolism
151.Kodo rhizosphere metagenomemgm4776125.3Shikimate 5-dehydrogenase (EC 1.1.1.25)
152.Kodo rhizosphere metagenomemgm4776125.3Quinate permease
153.Kodo rhizosphere metagenomemgm4776125.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
154.RAG10mgm4615275.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
155.RAG10mgm4615275.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
156.RAG11mgm4615276.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
157.RAG11mgm4615276.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
158.RAG12mgm4615277.33-dehydroshikimate dehydratase
159.RAG5bmgm4620456.33-dehydroshikimate dehydratase
160.RAG6mgm4615270.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
161.RAG6mgm4615270.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
162.RAG7mgm4615272.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
163.RAG7mgm4615272.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
164.RAG8mgm4615273.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
165.RAG8mgm4615273.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
166.RAG9mgm4615274.3Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
167.RAG9mgm4615274.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
168.RTP1mgm4612674.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
169.RTP1mgm4612674.3Protein QA-X
170.RTP1mgm4612674.33-dehydroshikimate dehydratase
171.RTP1mgm4612674.33-dehydroquinate dehydratase I (EC 4.2.1.10)
172.RTP10mgm4612902.33-dehydroquinate dehydratase I (EC 4.2.1.10)
173.RTP10mgm4612902.33-dehydroshikimate dehydratase
174.RTP10mgm4612902.3Protein QA-X
175.RTP10mgm4612902.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
176.RTP2mgm4612675.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
177.RTP2mgm4612675.3Protein QA-X
178.RTP2mgm4612675.33-dehydroshikimate dehydratase
179.RTP2mgm4612675.33-dehydroquinate dehydratase I (EC 4.2.1.10)
180.RTP3mgm4612676.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
181.RTP3mgm4612676.3Protein QA-X
182.RTP3mgm4612676.33-dehydroshikimate dehydratase
183.RTP3mgm4612676.33-dehydroquinate dehydratase I (EC 4.2.1.10)
184.RTP4mgm4612677.33-dehydroquinate dehydratase I (EC 4.2.1.10)
185.RTP4mgm4612677.33-dehydroshikimate dehydratase
186.RTP4mgm4612677.3Protein QA-X
187.RTP4mgm4612677.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
188.RTP5mgm4612679.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
189.RTP5mgm4612679.3Protein QA-X
190.RTP5mgm4612679.33-dehydroshikimate dehydratase
191.RTP5mgm4612679.33-dehydroquinate dehydratase I (EC 4.2.1.10)
192.RTP6mgm4612898.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
193.RTP6mgm4612898.3Protein QA-X
194.RTP6mgm4612898.33-dehydroshikimate dehydratase
195.RTP6mgm4612898.33-dehydroquinate dehydratase I (EC 4.2.1.10)
196.RTP7mgm4612899.33-dehydroquinate dehydratase I (EC 4.2.1.10)
197.RTP7mgm4612899.33-dehydroshikimate dehydratase
198.RTP7mgm4612899.3Protein QA-X
199.RTP7mgm4612899.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
200.RTP8mgm4612900.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)
201.RTP8mgm4612900.3Protein QA-X
202.RTP8mgm4612900.33-dehydroshikimate dehydratase
203.RTP8mgm4612900.33-dehydroquinate dehydratase I (EC 4.2.1.10)
204.RTP9mgm4612901.33-dehydroquinate dehydratase I (EC 4.2.1.10)
205.RTP9mgm4612901.33-dehydroshikimate dehydratase
206.RTP9mgm4612901.3Protein QA-X
207.RTP9mgm4612901.3Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)