List of genes/enzymes identified for n-Phenylalkanoic acid degradation in different metagenome datasets

 

S. No. Metagenome Name Metagenome Id (MG-RAST or EBI Metagenomics) Genes/Enzymes Identified
1.10LMmgm4478038.3Putative 3-hydroxyacyl-coa dehydrogenase
2.10LMmgm4478038.3enoyl-CoA hydratase, R-specific
3.11LMmgm4478222.3Putative 3-hydroxyacyl-coa dehydrogenase
4.11LMmgm4478222.3enoyl-CoA hydratase, R-specific
5.12LMmgm4478283.3Putative 3-hydroxyacyl-coa dehydrogenase
6.12LMmgm4478283.3enoyl-CoA hydratase, R-specific
7.13LMmgm4478290.3enoyl-CoA hydratase, R-specific
8.13LMmgm4478290.3Putative 3-hydroxyacyl-coa dehydrogenase
9.14LMmgm4478292.3Putative 3-hydroxyacyl-coa dehydrogenase
10.14LMmgm4478292.3enoyl-CoA hydratase, R-specific
11.15LMmgm4478291.3Putative 3-hydroxyacyl-coa dehydrogenase
12.15LMmgm4478291.3enoyl-CoA hydratase, R-specific
13.16LMmgm4478294.3enoyl-CoA hydratase, R-specific
14.16LMmgm4478294.3Putative 3-hydroxyacyl-coa dehydrogenase
15.17LMmgm4478936.3Putative 3-hydroxyacyl-coa dehydrogenase
16.17LMmgm4478936.3enoyl-CoA hydratase, R-specific
17.18LMmgm4478937.3Putative 3-hydroxyacyl-coa dehydrogenase
18.18LMmgm4478937.3enoyl-CoA hydratase, R-specific
19.19LMmgm4478938.3Putative 3-hydroxyacyl-coa dehydrogenase
20.19LMmgm4478938.3enoyl-CoA hydratase, R-specific
21.1b_R1mgm4709737.3enoyl-CoA hydratase, R-specific
22.1b_R1mgm4709737.3Putative 3-hydroxyacyl-coa dehydrogenase
23.1b_R2mgm4709735.3Putative 3-hydroxyacyl-coa dehydrogenase
24.1b_R2mgm4709735.3enoyl-CoA hydratase, R-specific
25.1LMmgm4477751.3Putative 3-hydroxyacyl-coa dehydrogenase
26.1LMmgm4477751.3enoyl-CoA hydratase, R-specific
27.1r_R1mgm4709721.3enoyl-CoA hydratase, R-specific
28.1r_R1mgm4709721.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
29.1r_R2mgm4709741.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
30.1r_R2mgm4709741.3Putative 3-hydroxyacyl-coa dehydrogenase
31.1r_R2mgm4709741.3enoyl-CoA hydratase, R-specific
32.20LMmgm4478939.3Putative 3-hydroxyacyl-coa dehydrogenase
33.20LMmgm4478939.3enoyl-CoA hydratase, R-specific
34.21LMmgm4479311.3enoyl-CoA hydratase, R-specific
35.21LMmgm4479311.3Putative 3-hydroxyacyl-coa dehydrogenase
36.22LMmgm4478940.3Putative 3-hydroxyacyl-coa dehydrogenase
37.22LMmgm4478940.3enoyl-CoA hydratase, R-specific
38.23LMmgm4478941.3Putative 3-hydroxyacyl-coa dehydrogenase
39.23LMmgm4478941.3enoyl-CoA hydratase, R-specific
40.24LMmgm4478943.3enoyl-CoA hydratase, R-specific
41.24LMmgm4478943.3Putative 3-hydroxyacyl-coa dehydrogenase
42.2b_R1mgm4709729.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
43.2b_R1mgm4709729.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
44.2b_R1mgm4709729.3enoyl-CoA hydratase, R-specific
45.2b_R2mgm4709728.3enoyl-CoA hydratase, R-specific
46.2b_R2mgm4709728.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
47.2b_R2mgm4709728.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
48.2LMmgm4477749.3Putative 3-hydroxyacyl-coa dehydrogenase
49.2LMmgm4477749.3enoyl-CoA hydratase, R-specific
50.2r_R1mgm4709742.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
51.2r_R1mgm4709742.3Putative 3-hydroxyacyl-coa dehydrogenase
52.2r_R1mgm4709742.3enoyl-CoA hydratase, R-specific
53.2r_R2mgm4709727.3enoyl-CoA hydratase, R-specific
54.2r_R2mgm4709727.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
55.2r_R2mgm4709727.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
56.3b_R1mgm4709722.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
57.3b_R1mgm4709722.3enoyl-CoA hydratase, R-specific
58.3b_R2mgm4709738.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
59.3b_R2mgm4709738.3Putative 3-hydroxyacyl-coa dehydrogenase
60.3b_R2mgm4709738.3enoyl-CoA hydratase, R-specific
61.3LMmgm4477755.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
62.3r_R1mgm4709734.3Putative 3-hydroxyacyl-coa dehydrogenase
63.3r_R1mgm4709734.3enoyl-CoA hydratase, R-specific
64.3r_R2mgm4709740.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
65.3r_R2mgm4709740.3Putative 3-hydroxyacyl-coa dehydrogenase
66.3r_R2mgm4709740.3enoyl-CoA hydratase, R-specific
67.4b_R1mgm4709733.3enoyl-CoA hydratase, R-specific
68.4b_R1mgm4709733.3Putative 3-hydroxyacyl-coa dehydrogenase
69.4b_R2mgm4709736.3Putative 3-hydroxyacyl-coa dehydrogenase
70.4b_R2mgm4709736.3enoyl-CoA hydratase, R-specific
71.4LMmgm4477757.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
72.4r_R1mgm4709731.3Putative 3-hydroxyacyl-coa dehydrogenase
73.4r_R1mgm4709731.3enoyl-CoA hydratase, R-specific
74.4r_R2mgm4709726.3enoyl-CoA hydratase, R-specific
75.4r_R2mgm4709726.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
76.4r_R2mgm4709726.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
77.5b_R1mgm4709730.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
78.5b_R1mgm4709730.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
79.5b_R1mgm4709730.3enoyl-CoA hydratase, R-specific
80.5b_R2mgm4709720.3enoyl-CoA hydratase, R-specific
81.5b_R2mgm4709720.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
82.5LMmgm4477789.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
83.5r_R1mgm4709723.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
84.5r_R1mgm4709723.3enoyl-CoA hydratase, R-specific
85.5r_R2mgm4709724.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
86.5r_R2mgm4709724.3enoyl-CoA hydratase, R-specific
87.6b_R1mgm4709739.3enoyl-CoA hydratase, R-specific
88.6b_R1mgm4709739.3Putative 3-hydroxyacyl-coa dehydrogenase
89.6b_R1mgm4709739.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
90.6b_R2mgm4709743.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
91.6b_R2mgm4709743.3Putative 3-hydroxyacyl-coa dehydrogenase
92.6b_R2mgm4709743.3enoyl-CoA hydratase, R-specific
93.6LMmgm4477790.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
94.6r_R1mgm4709732.3enoyl-CoA hydratase, R-specific
95.6r_R1mgm4709732.3Putative 3-hydroxyacyl-coa dehydrogenase
96.6r_R2mgm4709725.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
97.6r_R2mgm4709725.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
98.6r_R2mgm4709725.3enoyl-CoA hydratase, R-specific
99.7LMmgm4478030.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
100.8LMmgm4478037.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
101.9LMmgm4478934.33-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
102.BulkAG1mgm4615280.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
103.BulkAG1mgm4615280.3enoyl-CoA hydratase, R-specific
104.BulkAG2mgm4615281.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
105.BulkAG2mgm4615281.3enoyl-CoA hydratase, R-specific
106.BulkAG3mgm4615282.3enoyl-CoA hydratase, R-specific
107.BulkAG3mgm4615282.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
108.ERR031114ERS025421Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
109.ERR263018ERS238568Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
110.ERR263019ERS238569Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
111.ERR263020ERS238570Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
112.ERR263021ERS238571Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
113.ERR263022ERS238572Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
114.ERR263023ERS238573Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
115.ERR263024ERS238574Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
116.ERR263025ERS238575Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
117.ERR263026ERS238576Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
118.ERR263027ERS238577Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
119.ERR263028ERS238578Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
120.ERR263029ERS238579Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
121.ERR263030ERS238580Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
122.ERR263031ERS238581Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
123.ERR263032ERS238582Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
124.ERR263033ERS238583Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
125.ERR263034ERS238584Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
126.ERR263035ERS238585Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
127.ERR263036ERS238586Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
128.ERR566373ERS5066473-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
129.ERR566373ERS506647Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
130.ERR566373ERS506647enoyl-CoA hydratase, R-specific
131.ERR566374ERS506648Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
132.ERR566374ERS506648enoyl-CoA hydratase, R-specific
133.ERR566374ERS5066483-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
134.ERR566375ERS5066493-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
135.ERR566375ERS506649Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
136.ERR566375ERS506649enoyl-CoA hydratase, R-specific
137.ERR566376ERS5066503-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
138.ERR566376ERS506650Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
139.ERR566376ERS506650enoyl-CoA hydratase, R-specific
140.ERR566377ERS506651enoyl-CoA hydratase, R-specific
141.ERR566377ERS506651Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
142.ERR566377ERS5066513-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
143.ERR566378ERS5066523-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
144.ERR566378ERS506652Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
145.ERR566378ERS506652enoyl-CoA hydratase, R-specific
146.ERR566379ERS506653enoyl-CoA hydratase, R-specific
147.ERR566379ERS506653Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
148.ERR566379ERS5066533-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
149.ERR566380ERS506654enoyl-CoA hydratase, R-specific
150.ERR566380ERS5066543-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
151.ERR566380ERS506654Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
152.ERR566381ERS506655enoyl-CoA hydratase, R-specific
153.ERR566381ERS506655Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
154.ERR566381ERS5066553-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
155.ERR566382ERS5066563-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
156.ERR566382ERS506656Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
157.ERR566382ERS506656enoyl-CoA hydratase, R-specific
158.ERR566383ERS506657enoyl-CoA hydratase, R-specific
159.ERR566383ERS506657Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
160.ERR566383ERS5066573-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
161.ERR566384ERS5066583-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
162.ERR566384ERS506658Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
163.ERR566384ERS506658enoyl-CoA hydratase, R-specific
164.ERR566385ERS5066593-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
165.ERR566385ERS506659Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
166.ERR566385ERS506659enoyl-CoA hydratase, R-specific
167.ERR566386ERS506660Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
168.ERR566386ERS5066603-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
169.ERR566386ERS506660enoyl-CoA hydratase, R-specific
170.ERR566387ERS5066613-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
171.ERR566387ERS506661Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
172.ERR566387ERS506661enoyl-CoA hydratase, R-specific
173.Kodo rhizosphere metagenomemgm4776125.3enoyl-CoA hydratase, R-specific
174.Kodo rhizosphere metagenomemgm4776125.3Putative 3-hydroxyacyl-coa dehydrogenase
175.Kodo rhizosphere metagenomemgm4776125.3Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
176.RAG10mgm4615275.3Putative 3-hydroxyacyl-coa dehydrogenase
177.RAG10mgm4615275.3enoyl-CoA hydratase, R-specific
178.RAG11mgm4615276.3Putative 3-hydroxyacyl-coa dehydrogenase
179.RAG11mgm4615276.3enoyl-CoA hydratase, R-specific
180.RAG12mgm4615277.3enoyl-CoA hydratase, R-specific
181.RAG12mgm4615277.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
182.RAG5bmgm4620456.33-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
183.RAG5bmgm4620456.3enoyl-CoA hydratase, R-specific
184.RAG6mgm4615270.3Putative 3-hydroxyacyl-coa dehydrogenase
185.RAG6mgm4615270.3enoyl-CoA hydratase, R-specific
186.RAG7mgm4615272.3enoyl-CoA hydratase, R-specific
187.RAG7mgm4615272.3Putative 3-hydroxyacyl-coa dehydrogenase
188.RAG8mgm4615273.3Putative 3-hydroxyacyl-coa dehydrogenase
189.RAG8mgm4615273.3enoyl-CoA hydratase, R-specific
190.RAG9mgm4615274.3Putative 3-hydroxyacyl-coa dehydrogenase
191.RAG9mgm4615274.3enoyl-CoA hydratase, R-specific
192.RTP1mgm4612674.3enoyl-CoA hydratase, R-specific
193.RTP1mgm4612674.3Putative 3-hydroxyacyl-coa dehydrogenase
194.RTP10mgm4612902.3Putative 3-hydroxyacyl-coa dehydrogenase
195.RTP10mgm4612902.3enoyl-CoA hydratase, R-specific
196.RTP2mgm4612675.3Putative 3-hydroxyacyl-coa dehydrogenase
197.RTP2mgm4612675.3enoyl-CoA hydratase, R-specific
198.RTP3mgm4612676.3enoyl-CoA hydratase, R-specific
199.RTP3mgm4612676.3Putative 3-hydroxyacyl-coa dehydrogenase
200.RTP4mgm4612677.3Putative 3-hydroxyacyl-coa dehydrogenase
201.RTP4mgm4612677.3enoyl-CoA hydratase, R-specific
202.RTP5mgm4612679.3Putative 3-hydroxyacyl-coa dehydrogenase
203.RTP5mgm4612679.3enoyl-CoA hydratase, R-specific
204.RTP6mgm4612898.3enoyl-CoA hydratase, R-specific
205.RTP6mgm4612898.3Putative 3-hydroxyacyl-coa dehydrogenase
206.RTP7mgm4612899.3Putative 3-hydroxyacyl-coa dehydrogenase
207.RTP7mgm4612899.3enoyl-CoA hydratase, R-specific
208.RTP8mgm4612900.3Putative 3-hydroxyacyl-coa dehydrogenase
209.RTP8mgm4612900.3enoyl-CoA hydratase, R-specific
210.RTP9mgm4612901.3Putative 3-hydroxyacyl-coa dehydrogenase
211.RTP9mgm4612901.3enoyl-CoA hydratase, R-specific